Search results
Nov 20, 2020 · We have developed Cascabel, a scalable, flexible, and easy-to-use amplicon sequence data analysis pipeline, which uses Snakemake and a combination of existing and newly developed solutions for its computational steps.
- Alejandro Abdala Asbun, Marc A. Besseling, Sergio Balzano, Judith D. L. van Bleijswijk, Harry J. Wit...
- 10.3389/fgene.2020.489357
- 2020
- Front Genet. 2020; 11: 489357.
Oct 17, 2019 · We have developed Cascabel, a flexible and easy-to-use amplicon sequence data analysis pipeline, which uses Snakemake and a combination of existing and newly developed solutions for its...
We here provide Cascabel, a Snakemake (12) pipeline for the analysis of community marker gene sequence data which is easy to use for people with little bioinformatics background, and both flexible and powerful enough to be attractive for people with bioinformatics training.
PFT Interpretation – Rapid Guide Before the numbers / Quality control Review age, gender, smoking status, BMI, indication, flow-volume curves
MLA Citation "Appendix I: Flow Chart to Determine Appropriate Statistical Test to Analyze Data." Pharmacoepidemiology: Principles and Practice Waning B, Montagne M. Waning B, & Montagne M(Eds.), Eds. Brenda Waning, and Michael Montagne.
Nov 20, 2020 · Cascabel takes the raw data as input and delivers a table of operational taxonomic units (OTUs) or Amplicon Sequence Variants (ASVs) in BIOM and text format and representative sequences.
Using a test chart with low contrast (a gray on white image is typical) is a more stringent test than high contrast because as lenses are introduced into an image path, one of the major degradations it causes is the reduction of contrast. Therefore, if the initial test object is lower contrast, any reduction in contrast will be a
