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1. gdc.cancer.gov › about-data › data-types-and-fileData Types and File Formats | NCI Genomic Data Commons - Cancer

   gdc.cancer.gov › about-data › data-types-and-file

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   The GDC currently accepts DNA and RNA sequencing data in both FASTQ and BAM formats. Sequencing data is submitted with accompanying metadata in either simple tab-separated values (TSV) or the JavaScript Object Notation JSON format, or the latest version (currently 1.5) of the SRA XML format. Clinical and biospecimen data can be submitted in ...

2. www.nature.com › articles › s41588/021/00791-5The NCI Genomic Data Commons | Nature Genetics

   www.nature.com › articles › s41588/021/00791-5

   Feb 22, 2021 · NCI Genomic Data Commons. The NCI GDC was opened to the public in 2016 after 2 years of development by the NCI, the University of Chicago, the Ontario Institute for Cancer Research and Leidos ...

   • Author: Allison P. Heath, Vincent Ferretti, Vincent Ferretti, Stuti Agrawal, Stuti Agrawal, Maksim An, Maksi...

   • Publish Year: 2021

3. www.cancer.gov › research › infrastructureBioinformatics, Big Data, and Cancer - NCI

   www.cancer.gov › research › infrastructure

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   The NCI Genomic Data Commons (GDC) provides a single source for data from NCI-funded initiatives and cancer research projects, as well as the analytical tools needed to mine them. The GDC includes data from TCGA, TARGET, and the Genomics Evidence Neoplasia Information Exchange (GENIE). The GDC will continue to grow as NCI and individual ...

4. www.nature.com › articles › s41467/021/21254-9Uniform genomic data analysis in the NCI Genomic Data Commons

   www.nature.com › articles › s41467/021/21254-9

   Feb 22, 2021 · The National Cancer Institute’s (NCI’s) Genomic Data Commons (GDC) 1,2 currently contains NCI-generated data from some of the largest and most comprehensive cancer genomic datasets, including ...

   • Author: Zhenyu Zhang, Kyle Hernandez, Jeremiah Savage, Jeremiah Savage, Shenglai Li, Dan Miller, Dan Miller,...

   • Publish Year: 2021

5. gdc.cancer.gov › support › documentationDocumentation | NCI Genomic Data Commons - Cancer

   gdc.cancer.gov › support › documentation

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   GDC Data. The GDC provides researchers with access to standardized clinical and genomic data from large-scale cancer studies from NCI and external programs. Provides information on the different data types and file formats that the GDC supports. Includes the relationship of GDC data types to data levels as well as information on important metadata.

6. www.nature.com › articles › s41588/021/00791-5The NCI Genomic Data Commons - Nature

   www.nature.com › articles › s41588/021/00791-5

   The National Cancer Institute (NCI) Genomic Data Commons (GDC) contains more than 2.9 petabytes of genomic and associated clinical data from more than 60 NCI-funded and other contributed cancer ...

7. People also ask

   What is the NCI Genomic Data Commons (GDC)?

   • The NCI Genomic Data Commons (GDC) provides a single source for data from NCI-funded initiatives and cancer research projects, as well as the analytical tools needed to mine them. The GDC includes data from TCGA, TARGET, and the Genomics Evidence Neoplasia Information Exchange (GENIE).

   Bioinformatics, Big Data, and Cancer - NCI - National Cancer Institute

   www.cancer.gov/research/infrastructure/bioinformatics

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   What is the NCI GDC?

   • The NCI GDC was opened to the public in 2016 after 2 years of development by the NCI, the University of Chicago, the Ontario Institute for Cancer Research and Leidos Biomedical Research. The GDC is a data commons for cancer genomics data and associated clinical and imaging data from NCI-funded projects and researchers.

   The NCI Genomic Data Commons | Nature Genetics

   www.nature.com/articles/s41588-021-00791-5

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   What is the NCI Cancer Research Data Commons (CRDC)?

   • The NCI Cancer Research Data Commons (CRDC) is a data science infrastructure that connects cancer research data collections with analytical tools. The CRDC can be used to store, analyze, share, and visualize cancer research data types, including proteomics, animal models, and epidemiological cohorts.

   Bioinformatics, Big Data, and Cancer - NCI - National Cancer Institute

   www.cancer.gov/research/infrastructure/bioinformatics

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   What is the National Cancer Informatics program (NCIP)?

   • The National Cancer Informatics Program (NCIP) is involved in numerous research areas, including genomic, clinical, and translational studies, and is exploring how to improve data sharing, analysis, and visualization.

   Bioinformatics, Big Data, and Cancer - NCI - National Cancer Institute

   www.cancer.gov/research/infrastructure/bioinformatics

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   What data models are supported by the GDC?

   • The GDC has developed a graph-based data model that supports molecular data, clinical data, image data and biospecimen data. The model is flexible, and additional properties may be added as new projects contribute data. The GDC data model and the GDC data dictionary that supports it are described in the Supplementary Note.

   The NCI Genomic Data Commons - Nature

   www.nature.com/articles/s41588-021-00791-5.pdf

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   Which data formats does the GDC accept?

   • The GDC accepts DNA and RNA sequencing data in both FASTQ and BAM formats. Accompanying metadata can be submitted in either simple tab-separated values (TSV), JavaScript Object Notation (JSON) format, or the latest version (currently 1.5) of the SRA XML format.

   Data Types and File Formats | NCI Genomic Data Commons

   gdc.cancer.gov/about-data/data-types-and-file-formats

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8. gdc.cancer.gov › about-gdc › gdc-faqsGDC FAQs | NCI Genomic Data Commons - Cancer

   gdc.cancer.gov › about-gdc › gdc-faqs

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   The NCI Genomic Data Commons (GDC) is the next generation repository and cancer knowledge base supporting the import and standardization of genomic and clinical data from cancer research programs (e.g. TCGA, TARGET, CGCI), the harmonization of sequence data to the genome / transcriptome, and the application of state-of-the art methods for derived data (e.g. mutation calls, structural variants ...